Starr Hazard wrote:
mdl.assess_dope(output='ENERGY_PROFILE NO_REPORT',
file=code+'.profile',
normalize_profile=True, smoothing_window=15)
are producing output files with a question mark in the name string.
ABC31_HUMAN.BL09950001.pdb?.profile
If this is from your earlier script, you're getting 'code' from the following bit of Python:
code = in_file.readline()Note that readline() does not remove the line-end character(s), and that's probably confusing Modeller. Try putting in
code = code.rstrip('\r\n')
after you read the line from your file.
The question mark renders cp, mv and rename incapable of doing anything with the file.
You can just quote the filename, or escape the ? with a \ character, to make cp, mv and friends work with it.
Ben Webb, Modeller Caretaker
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