[modeller_usage] To use separate templates for different region of a protein
To:
Subject: [modeller_usage] To use separate templates for different region of a protein
From: Shirley Li <>
Date: Thu, 8 Dec 2005 14:03:57 -0800 (PST)
Dear All,
With MODELLER, I wonder if it is possible to use different template(s) for different region of one target protein. For example, One protein has domain 1, 2 and 3. I would like to construct a complete model of this protein, with templates A and B for domain 1, templates C,D,and E for domain 3, and domain 2 already has coordinates/structure, which need to be preserved in the complete model.
Is there any way to do the above? If so, how? I tried to use the "inifile" feature and use the existing coordinate file of domain 2 as "inifile". while I got error message of " Atom index is out of range (iatm,natm)".
Any help/information will be very much appreciated.
Shirley
Yahoo! Shopping
Find Great Deals on Holiday Gifts at Yahoo! Shopping