Ludovic Pétain wrote:
*_modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found** in the alignment file; ALIGN_CODES( 1) = tasser*
You should check your alignment file (you didn't attach it to your post) to make sure that you have a sequence with the code 'tasser'. See http://salilab.org/modeller/manual/node176.html
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage