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Re: [modeller_usage] Regarding > Compare.py < execution

Robert Selwyne wrote:

But to the next step when i ran the command for comparision

$mod8v2 Targetcompare.py

i got these errors!!!!!!!!!!!!

=============================================================================

[robert@cmm0 basic-example]$ mod8v2 Targetcompare.py
Traceback (most recent call last):
  File "Targetcompare.py", line 6, in ?
    aln.malign3d()
  File "/usr/lib/modeller8v2/modlib/modeller/alignment.py", line 210, in
malign3d
    io=io.modpt, libs=libs.modpt, **vars)
  File "/usr/lib/modeller8v2/modlib/modeller/util/top.py", line 93, in
malign3d
    return _modeller.malign3d(aln, io, libs, *args)
_modeller.error: malign3_682E> Structural information is not available for
all sequences in the alignment. Aborting.[robert@cmm0 basic-example]$

============================================================================
You should check the Targetcompare.log file. Most likely you don't have the necessary PDB files available to provide structural information for all sequences in your alignment, and these will be listed in the .log file. 

	Ben Webb, Modeller Caretaker
--
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