Dear Friends,
I got my initial model for my protein using MODELLER 9v1 which was further
assessed by DOPE potential in MODELLER to evaluate model fold and with the
program PROCHECK and VERIFY3D. In Ramachandran plot my model showed 93.9%
core 5.8% allow .0% gener .3% disall region and 3 bad contacts.
Verify 3d data showed above 90% of the residues had an averaged 3D-1D
score > 0.2.
Please suggest whether I shall have to do energy minimization and if
energy minimization is necessay also suggest how it is possible and which
parameter I shall have to use for energy minimization.
Best regards.
--
Chiranjit Chowdhury
Department of Biotechnology
Indian Institute of Technology, Kharagpur
West Bengal, India
PIN: 721302