Re: [modeller_usage] Model missing residues in a trimer

["Panagiotis L. Kastritis" <>]

Hello again!

Actually I understood what is going wrong... modeller renumbers everything so at first it finds the residues of chain A that are missing... However, the next ones will be 128-130 and not 1-3... 
Is there a way to keep the initial numbering and not let modeller renumber my structures? 

Sorry for being stubborn :)

Cheers

Panagiotis

2009/10/26 Modeller Caretaker <">>

Panagiotis L. Kastritis wrote:

Thank you for your immediate response.
it gives an error, saying 'no such residue 1:B'

...

Can you tell me what i am doing wrong?

I would have thought it was obvious. ;) You are trying to select residue 1 in chain B, but there is no such residue. In fact, looking at 1a2k in PDB, I see that the first residue in chain B is numbered 4, so there is no residue '1' (or 2 or 3). You simply need to fix the residue numbers in your script.

       Ben Webb, Modeller Caretaker
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