Re: [modeller_usage] Model missing residues in a trimer
To: Modeller Caretaker <>
Subject: Re: [modeller_usage] Model missing residues in a trimer
From: "Panagiotis L. Kastritis" <>
Date: Mon, 26 Oct 2009 20:48:25 +0100
Actually I understood what is going wrong... modeller renumbers everything so at first it finds the residues of chain A that are missing... However, the next ones will be 128-130 and not 1-3... Is there a way to keep the initial numbering and not let modeller renumber my structures?
Thank you for your immediate response.
it gives an error, saying 'no such residue 1:B'
Can you tell me what i am doing wrong?
I would have thought it was obvious. ;) You are trying to select residue 1 in chain B, but there is no such residue. In fact, looking at 1a2k in PDB, I see that the first residue in chain B is numbered 4, so there is no residue '1' (or 2 or 3). You simply need to fix the residue numbers in your script.