Re: [modeller_usage] Model missing residues in a trimer

[Modeller Caretaker <>]

Panagiotis L. Kastritis wrote:
> Actually I understood what is going wrong... modeller renumbers 
> everything so at first it finds the residues of chain A that are 
> missing... However, the next ones will be 128-130 and not 1-3...
> Is there a way to keep the initial numbering and not let modeller 
> renumber my structures?

My last post should answer your question: 
http://salilab.org/archives/modeller_usage/2009/msg00245.html

In this case you can't use option (1) because you won't have a PDB file 
containing the missing residues and their numbers (unless you manually 
create a dummy one; remember that Modeller only parses the ATOM/HETATM 
records, not SEQRES). (2) might be easiest if the numbering is sequential.

	Ben Webb, Modeller Caretaker
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