Manoel, I have recently started using modeller and also have Vista. I created a folder under my username and put all my script and atom etc. files in it. I left the modeller9v7 folder in the program files directory it was installed into. I run modeller from the start menu and use the cd command to change to the directory with my script files. This setup has been working for me.
> Dear Ben,
>
> thanks for the information.
> I did it, but another problem started.
>
> I moved the Modeller9v7 folder to Desktop and now when I tried to run
> the command mod9v7, the following message appears:
>
> 'mod9v7' is not recognized as an internal or external command,
> operable program or batch file.
>
> I also tried to move Python 26 in the same folder. However, it stops
> to work. In addition, when Python is in Program files folder and I
> try to run some example from Modeller (for example:
> salign_multiple.py) using IDLE, I got the following message:
>
> Import Error: no module named modeller
>
> So, what should I do? I'm sorry, but I'm really confused how to use
> Modeller in the Windows Vista platform.
>
> Thanks so much,
>
> Manoel
>
>
>
>
>
>
> ________________________________
> De: Modeller Caretaker <modeller-care@salilab.org>
> Para: Manoel Arcisio-Miranda <manoelarcisio@yahoo.com.br>
> Cc: modeller_usage@salilab.org
> Enviadas: Seg, Outubro 26, 2009 1:24:31 PM
> Assunto: Re: [modeller_usage] Permission denied message
>
> Manoel Arcisio-Miranda wrote:
>> I am beginner in modeling of proteins. I downloaded the Modeller 9v7
>> (Windows package) and I am following the tutorials. I just started
>> the Basic Modeling tutorial, but when I type any command at the
>> command line, for example: mod9v7 build_profile.py, the following
>> message appear:
>>
>> Cannot open logfile build_profile.log: Permission denied
>
> See step 6 at http://salilab.org/modeller/9v7/release.html#windows
>
> Windows Vista has stricter security than older versions of Windows;
> it won't let you write into a directory that you don't own, so it
> won't let Modeller create log files there (or any other output files,
> such as models). Make a new directory, put the files there, use the
> 'cd' command to change into it, and then run 'mod9v7'. Don't run
> things directly out of the Modeller install directory.
>
> Ben Webb, Modeller Caretaker
> -- modeller-care@salilab.orghttp://www.salilab.org/modeller/
> Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
>
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