Re: [modeller_usage] how to include a pepetide during homology modelling?
To: albert <>
Subject: Re: [modeller_usage] how to include a pepetide during homology modelling?
From: Modeller Caretaker <>
Date: Mon, 07 Feb 2011 08:05:32 -0800
Cc: modeller_usage <>
On 2/7/11 7:22 AM, albert wrote:
I just find that Modeller could build model containing a small molecular
within it. And I am wondering how to building model including a peptide
from template?
It depends what you mean by "include", but if you want to treat it like
any other ligand, just use the '.' residue type in your alignment and
Modeller will copy it from template to target, and model it rigidly.