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Re: [modeller_usage] High energy in template-based parts of the model

On 05/02/2011 03:57 AM, Lilit Nersisyan wrote:

The problem is that when I plot the DOPE profiles
of the generated models, I see that the template-based segments
(especially the 590-781 segment) have the highest energy.

DOPE is an assessment method which aims to tell you how close to native 
a model structure is. Like any assessment method, it cannot always make 
this determination with 100% accuracy. Since you know these segments are 
native-like anyway, I would suggest you trust that information over what 
DOPE is suggesting.

	Ben Webb, Modeller Caretaker
--
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