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Re: [modeller_usage] In what are the initial structures different?

On 04/08/2012 11:58 PM, BIN ZHANG wrote:

I have a question about the differences of the initial structure built
for homology modeling. Can anyone tell me how exactly are these initial
structures different? Do they differ in the secondary structures in
uncertain regions? I cannot find this information in the manual.
See http://salilab.org/modeller/9.10/manual/node470.html, in particular step 3 and substep 3. The initial structures are simply randomized by calling selection.randomize_xyz(). 

	Ben Webb, Modeller Caretaker
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