[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] In what are the initial structures different?

On 04/08/2012 11:58 PM, BIN ZHANG wrote:

I have a question about the differences of the initial structure built
for homology modeling. Can anyone tell me how exactly are these initial
structures different? Do they differ in the secondary structures in
uncertain regions? I cannot find this information in the manual.

See http://salilab.org/modeller/9.10/manual/node470.html, in particular 
step 3 and substep 3. The initial structures are simply randomized by 
calling selection.randomize_xyz().

	Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage