I got the following error when trying to run a old python script (see
below) that worked very well before. A couple of days ago, I removed the
Java came from the system (Fedora 13) and installed Java from java.com
(jdk-7u4-linux-i586.rpm, jre-7u4-linux-i586.rpm) to fix a crash problem
of Jalview.
I wonder if the problem is related to the new Java or some other
problems.
Modeller doesn't use Java, so I doubt this is the cause of your problem.
modeller.parallel.communicator.RemoteError: IndexError: user_form__E>
Functional form 8195 out of range from<Slave on localhost>
OK, so the master is telling you that one of the slaves encountered a
problem. You can look in the .slave output files to find which slave it
was - there may be some more information in there. The error suggests
that your restraints file is corrupted - maybe a filesystem problem such
as the disk filling up or quota exceeded?