Re: [modeller_usage] what based we have to select structure from DBali and how ?

Respected sir

Hi dear friend Rene you are absolutely correct because when i was
clustered 1bdmA i got nearly 2782 similar structures including these four
(2mdh:A, 2mdh:B,1b8p:A and 1dbm:A) but i didnt get 1b8p:A in this series
that's why i got confused.

one more confusion is for selecting these structures which one we have to
give more preference among these four values (RMSD (Å),Seq.
Id.(%),Eq.Pos,P-value)

---------------------------------------------------------------------------->
Hello Ben,
>
> I talked to someone that has experience with inputting data into this
> system and he had told me that I submitted it wrong. I do apologize for
> the inconvenience.
>
> Rene
>
> On Tue, Jul 17, 2012 at 12:29 PM, <> wrote:
>
>> Respected sir
>>
>> when i am practising example of advance modelling in modeller tutorial
>> .... i got little confusion that in what based we have to select
>> structure
>> from DBali and how and why you choosed specifically these four
>> structures
>>
>> Doubted line:
>>
>> "The structure of the Malate Dehydrogenase 1bdm has been clustered in
>> the
>> DBAli database within the family fm00495 of 4 members (2mdh:A, 2mdh:B.
>> 1b8p:Aand 1dbm:A). "
>>
>> _______________________________________________
>> modeller_usage mailing list
>> 
>> https://salilab.org/mailman/listinfo/modeller_usage