[modeller_usage] [Fwd: Re: doubt on selecting condition]

Respected sir

   Could you please clarify my doubt that among these four values which
one we have to more preference (RMSD(Å),Seq.Id.%)'Eq.Pos.P-value) for
selecting these four   Structure's(2mdh:A,2mdh:B.1b8p:A,1dbm:A) for
given example of advance modelling  in modeller tutorial.

Really sorry for asking this same question again and again because i could
not convince with your last messages and i hope this time you will clear
my doubt.

thanks you somuch for your reply's

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The structure of the Malate Dehydrogenase 1bdm has been clustered in the
DBAli database within the family fm00495 of 4 members (2mdh:A, 2mdh:B.
1b8p:Aand 1dbm:A). The multiple alignment generated by the command
salign() in MODELLER is used in DBAli to generate a multiple structure
alignment of the family. The alignment can be downloaded from the DBAli
database or you can use the file `salign.py' to calculate it on your
computer.
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