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Re: [modeller_usage] is it possible run MUTATE_MODEL (optimization step alone) in multithreading / Parallel job ?

On 07/04/2016 11:06 AM, Mahesh Velusamy wrote:

Actually, I am using Mutate_model.py
script(http://salilab.org/modeller/wiki/Mutate%20model) to generate single
point mutant models for large mutation library with an optimization of
selected region(~280 atoms).

There is no issue on time using for mutating residues but the script takes
long time to finish the optimization step alone. So, I want to put this
optimization step alone as a multithreading (running on all the CPU
cores)similar to a.use_parallel_job(j)# Use the job for model building
Sorry, it's not possible to parallelize a single optimization run. The only reason we can parallelize automodel is that automodel builds multiple independent models, so we can simply build each model on a separate core. 

	Ben Webb, Modeller Caretaker
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             https://salilab.org/modeller/
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