Re: [modeller_usage] Query Regarding Running Modeller From Mac

[Mahesh VELUSAMY <>]

Dear Aparna,

I hope you sourced all the  modeller binaries after the installation of 
modeller. If not kindly source all the binaries (which locates under the 
bin directory) via placing them in .bashrc file.

you should have the below details in your ~/.bashrc file.

Here is my  ~/.bashrc entries for modeller. You can use this as 
reference but don't forget to replace your paths in place of all 
necessary path details.

export PATH="/user/bin/modeller9.18/bin/mod9.18:${PATH}"

if [ -z $PYTHONPATH ]
then
    export 
PYTHONPATH="/user/bin/modeller9.18/lib/x86_64-intel8/python2.5:/user/bin/modeller9.18/modlib/"
else
    export 
PYTHONPATH="${PYTHONPATH}:/user/bin/modeller9.18/lib/x86_64-intel8/python2.5:/user/bin/modeller9.18/modlib/"
fi

if [ -z $LD_LIBRARY_PATH ]
then
    export LD_LIBRARY_PATH="/user/bin/modeller9.18/lib/x86_64-intel8"
else
    export 
LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/user/bin/modeller9.18/lib/x86_64-intel8"
fi

Happy modelling

 On 02-07-2018 10:24, Aparna Bahuguna wrote:
> Whenever I type the command model-default.py it says no such file or
> directory found. How should I prepare this file. Even when I
> downloaded the example files there was no such file found.
>
> On Sun, Jul 1, 2018 at 11:48 PM, Aparna Bahuguna
> <> wrote:
>
> > I installed modeller on Macbook Pro OS X Yosemite 10.10.5. But it
> > does not work. I made the python files and transferred them to the
> > bin folder in library. Then I opened terminal and gave the command:
> > PYTHON MODEL-DEFAULT.PY > MODEL-DEFAULT.LOG but it said permission
> > denied. I installed python separately still it did not work. Kindly
> > suggest how can I run modeller through Mac Book.
> >
> > --
> >
> > Aparna Bahuguna
> > c/o Prof. D. S. Rawat
> > Department of Chemistry
> > University of Delhi
> > New Delhi - 110007
>
> --
>
> Aparna Bahuguna
> c/o Prof. D. S. Rawat
> Department of Chemistry
> University of Delhi
> New Delhi - 110007
>
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