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Re: [modeller_usage] Alignment format in fasta



On 8/25/18 9:52 AM, Ahmad Khalifa wrote:
Can I get an alignment in fasta format between two proteins using modeller? Can I convert the pir or par format to fasta?

Sure, alignment.write() can write out in FASTA format. See https://salilab.org/modeller/9.20/manual/node293.html for an example.

	Ben Webb, Modeller Caretaker
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