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Re: [modeller_usage] Alignment format in fasta

To: Ahmad Khalifa <underoath006@gmail.com>, modeller_usage@salilab.org
Subject: Re: [modeller_usage] Alignment format in fasta
From: Modeller Caretaker <modeller-care@salilab.org>
Date: Mon, 27 Aug 2018 10:42:07 -0700

On 8/25/18 9:52 AM, Ahmad Khalifa wrote:

Can I get an alignment in fasta format between two proteins usingmodeller? Can I convert the pir or par format to fasta?

Sure, alignment.write() can write out in FASTA format. Seehttps://salilab.org/modeller/9.20/manual/node293.html for an example.

	Ben Webb, Modeller Caretaker
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modeller-care@salilab.org             https://salilab.org/modeller/
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References:
- [modeller_usage] Alignment format in fasta
  - From: Ahmad Khalifa <underoath006@gmail.com>

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