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Re: [modeller_usage] Alignment format in fasta
- To: Ahmad Khalifa <>,
- Subject: Re: [modeller_usage] Alignment format in fasta
- From: Modeller Caretaker <>
- Date: Mon, 27 Aug 2018 10:42:07 -0700
On 8/25/18 9:52 AM, Ahmad Khalifa wrote:
Can I get an alignment in fasta format between two proteins using
modeller? Can I convert the pir or par format to fasta?
Sure, alignment.write() can write out in FASTA format. See
https://salilab.org/modeller/9.20/manual/node293.html for an example.
Ben Webb, Modeller Caretaker
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