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Re: [modeller_usage] Creating a threaded protein template?



On 8/25/18 10:13 AM, Ahmad Khalifa wrote:
I want to create a threaded template without building the nonaligned region? is it possible using modeller?

Modeller doesn't create templates - it makes models using templates. If you mean you want to build a model of only the residues that are aligned to a template, then sure, just remove all unaligned residues from your target sequence.

	Ben Webb, Modeller Caretaker
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             https://salilab.org/modeller/
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