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Re: [modeller_usage] Creating a threaded protein template?

To: Ahmad Khalifa <underoath006@gmail.com>, modeller_usage@salilab.org
Subject: Re: [modeller_usage] Creating a threaded protein template?
From: Modeller Caretaker <modeller-care@salilab.org>
Date: Mon, 27 Aug 2018 11:06:14 -0700

On 8/25/18 10:13 AM, Ahmad Khalifa wrote:

I want to create a threaded template without building the nonalignedregion? is it possible using modeller?

Modeller doesn't create templates - it makes models using templates. Ifyou mean you want to build a model of only the residues that are alignedto a template, then sure, just remove all unaligned residues from yourtarget sequence.

	Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org             https://salilab.org/modeller/
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage

References:
- [modeller_usage] Creating a threaded protein template?
  - From: Ahmad Khalifa <underoath006@gmail.com>

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