Sali Lab logo Laboratory of Andrej Sali QB3

Lab Members

Former Lab Members

Group Leader

photo: ©

Andrej Sali


Administrative Assistant

Steve Ha

Postdocs & Adjuncts

Ignacia Echeverria

Assistant Adjunct Professor
  • Integrative structure determination of the Nuclear Pore Complex.
  • Characterizing host-pathogen interactions using data from different sources.
  • Leveraging large-scale genetic interaction mapping to model the structures of protein assemblies.

Kenneth Huang

Postdoctoral Scholar
  • Modeling multi state ensemble of the Nsp2 protein
  • Integrative meta-modeling of the nuclear pore complex

Atreya Dey

Postdoctoral Scholar
  • Method development for IMP
  • Analysis of deep mutational scanning data

Arthur Zalevsky

Postdoctoral Scholar
  • Development of the PDB-Dev repository of integrative structures
  • Integrative modeling of biomolecular assemblies guided by chemical crosslinking and electron microscopy data

Vipul Kumar

Postdoctoral Scholar
  • Development and Application of IMP for Integrative Modeling of Prion-Associated Macromolecular Assemblies
  • Development and Application of Integrative Modeling to Integrate Cryo-ET and Footprinting Data
  • Modeling and High-Throughput Virtual Screening of Molecules Against Transport Proteins

Sree Ganesh Balasubramani

Postdoctoral Scholar
  • Bayesian hierarchical modeling of protein structures using data from in vivo experiments

Neelesh Soni

Postdoctoral Scholar
  • Development and application of IMP for integrative modeling of macromolecular assemblies
  • Integrative modeling of NPC and its sub-complexes
  • Development of tools for microenvironment mapping

Andrew Latham

Postdoctoral Scholar
  • Spatiotemporal integrative modeling of macromolecular assemblies.
  • Characterizing the nuclear pore complex assembly pathway

Abantika Pal

Postdoctoral Scholar
  • Modeling the structures of protein assemblies utilizing hierarchical mapping of cell architecture.
  • Application of IMP for integrative modeling of biomolecular assemblies associated with cancer.

Eli Draizen

Postdoctoral Scholar
  • Bayesian Meta-modeling with deep generative models.
  • Protein-protein interactions and whole cell modeling.
  • Explainable AI for protein evolution.

Surabhi Rathore

Postdoctoral Scholar
  • Method development to utilize CRISPR-a, CRISPR-n, and SEC-MS data as network and spatial restraints for integrative modeling of HIV-host protein interaction networks and structures.
  • Integrative modeling of human TRIM5a-HIV1 capsid using DMS data.

Jared Sagendorf

Postdoctoral Scholar

Eliot Jefferys

Postdoctoral Scholar

Vikas Tiwari

Postdoctoral Scholar

Graduate Students

Aji Palar

Graduate Student
Graduate Program in Biophysics
  • Integrative structural biology of host-pathogen complexes
  • Integrative network modeling

Matthew Hancock

Graduate Student
Graduate Program in Biophysics
  • Integrative modeling of macromolecular ensembles
  • Thermodynamic approximations from structural ensembles

Mark Ware

Graduate Student

Scientific Programmers

Ben Webb

Academic Coordinator
  • Development of the Modeller package for comparative modeling.
  • Development of the IMP platform for assemblies and modeling.
  • Refinement of protein structure models.
  • Systems administration.
Andrej Sali, PhD, Professor, Department of Bioengineering and Therapeutic Sciences; Department of Pharmaceutical Chemistry; School of Pharmacy, University of California at San Francisco, UCSF MC 2552, Mission Bay, Byers Hall, 1700 4th Street, Suite 503B, San Francisco, CA 94143, Tel +1 (415) 514-4227, Fax +1 (415) 514-4231, 4234, , Web

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