IHM-repval March 2017

ihm-repval@salilab.org

3 participants
2 discussions

This month's "large group" integrative/hybrid modeling Skype call
by Ben Webb 03 Apr '17

03 Apr '17

Hi all - the monthly Skype call for the integrative/hybrid modeling project this month will be on Thursday March 30th: https://github.com/ihmwg/IHM-dictionary/wiki/Meetings We generally hold these meetings at 9am Pacific time, but we appreciate that some people might like to attend but can't due to the time. I'll send out a Doodle poll shortly to you all so we can get a better idea of who wants to join and what time might work for a larger group. Ben -- ben(a)salilab.org https://salilab.org/~ben/ "It is a capital mistake to theorize before one has data." - Sir Arthur Conan Doyle

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Linking integrative models out to experimental data
by Ben Webb 13 Mar '17

13 Mar '17

Hi all, As you know, whenever we build an integrative or hybrid model we need to point to multiple sources of input experimental data. It doesn't make sense to embed that data directly in an mmCIF file because that would be very inefficient, so instead we need to link out to wherever the raw and/or processed experimental datasets are stored, ideally in a repository maintained by experts in the field (e.g. PDB, EMDB, SASBDB). I've summarized the kinds of data that we've been dealing with so far in our own modeling, with pointers to repositories where available, in the wiki: https://github.com/ihmwg/IHM-dictionary/wiki/External%20data Please take a look and add to it (or reply to this email). It seems likely that there are many modeling scenarios that neither RCSB nor the Sali lab have considered thus far. Ben -- ben(a)salilab.org https://salilab.org/~ben/ "It is a capital mistake to theorize before one has data." - Sir Arthur Conan Doyle

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IHM-repval March 2017