Thanks to everyone who joined us for the I/H methods meeting yesterday. It is a challenge every time we organize one of these meetings since our time zones span all the way from Japan to California and it is always inconvenient to someone or the other. Regardless, thank you for joining the meeting and contributing towards a very productive discussion.
The meeting summary is now available on the project GitHub wiki page https://github.com/ihmwg/IHM-dictionary/wiki/IHM-Meeting-Summary-Nov-16-2017. Please let me know if you have any questions in this regard.
Brinda
---------- Forwarded message ---------- From: Brinda Vallat brinda.vallat@rcsb.org Date: Wed, Nov 15, 2017 at 12:33 PM Subject: Reminder: This month's "large group" I/H methods meeting tomorrow To: ihm-repval@salilab.org
Hello Everyone,
Based on the doodle poll https://doodle.com/poll/h6uqs77v4mp7fbgy, this month's I/H methods meeting is fixed for Thursday, November 16th at 1PM PST, 3PM CST, 4PM EST, 9PM GMT, 10PM CET and 6AM JST (November 17th). The following have confirmed their attendance.
*Confirmed attendees*
Ben Webb (UCSF, US) Tom Goddard (UCSF, US) Brinda Vallat (RCSB, US) John Westbrook (RCSB, US) Aleks Gutmanas (PDBe, UK) John Berrisford (PDBe, UK) Kumaran Baskaran (BMRB, US) Lukas Honig (TU, Berlin) Gert-Jan Bekker (PDBj, Japan)
If anyone else would like to join the meeting, please let me know. I encourage everyone to attend so as to make these meetings more effective.
*Meeting agenda*
1. Update on I/H methods project 2. Open discussion
*Connection details*
We will use Level 3 phone bridge for the voice call and joinme for screen sharing. We will not have any video.
*For the Level 3 voice call: *
1. Using a regular phone, call the following number based on which country you are calling from. If the toll-free number does not work for some reason, please use the toll number.
Toll-free Toll
*US* 8007475150 <(800)%20747-5150> 3032481290 <(303)%20248-1290> *UK* 08004960577 02079040082 *Germany* 08001014525 030700150716 *Japan* 0120925970 0350501282, 0357674709 *Netherlands* 08002658213 0207084833 *Spain* 900800371 917911823 *Switzerland* 0800700283 0434569404
2. Enter the following access code: 4454974 followed by #
*For the Joinme screen share: *
3. Go to http://join.me/rcsbmeeting http://join.me/rcsbmeeting
Please let me know if you have any further questions.
Thank you.
Dear all
I was this week at a meeting in Hamburg where I advertised the new deposition site.
One very valid comment was about user-friendliness. To promote / stimulate deposition it will be important to provide a simple way of editing the cif files, i.e not only via the deposition system, but by providing examples that can be edited in a simple manner.
A cif editor would be great. And don’t come with the argument there are python (or other) libraries to handle those. This will not work for end users.
Just passing on remarks I got from potential depositors (and these were kind of software experts).
Cheers Alexandre
> On 17 Nov 2017, at 19:41, Brinda Vallat brinda.vallat@rcsb.org wrote: > > Thanks to everyone who joined us for the I/H methods meeting yesterday. It is a challenge every time we organize one of these meetings since our time zones span all the way from Japan to California and it is always inconvenient to someone or the other. Regardless, thank you for joining the meeting and contributing towards a very productive discussion. > > The meeting summary is now available on the project GitHub wiki page https://github.com/ihmwg/IHM-dictionary/wiki/IHM-Meeting-Summary-Nov-16-2017. Please let me know if you have any questions in this regard. > > Brinda > > > ---------- Forwarded message ---------- > From: Brinda Vallat <brinda.vallat@rcsb.org mailto:brinda.vallat@rcsb.org> > Date: Wed, Nov 15, 2017 at 12:33 PM > Subject: Reminder: This month's "large group" I/H methods meeting tomorrow > To: ihm-repval@salilab.org mailto:ihm-repval@salilab.org > > > Hello Everyone, > > Based on the doodle poll https://doodle.com/poll/h6uqs77v4mp7fbgy, this month's I/H methods meeting is fixed for Thursday, November 16th at 1PM PST, 3PM CST, 4PM EST, 9PM GMT, 10PM CET and 6AM JST (November 17th). The following have confirmed their attendance. > > Confirmed attendees > > Ben Webb (UCSF, US) > Tom Goddard (UCSF, US) > Brinda Vallat (RCSB, US) > John Westbrook (RCSB, US) > Aleks Gutmanas (PDBe, UK) > John Berrisford (PDBe, UK) > Kumaran Baskaran (BMRB, US) > Lukas Honig (TU, Berlin) > Gert-Jan Bekker (PDBj, Japan) > > If anyone else would like to join the meeting, please let me know. I encourage everyone to attend so as to make these meetings more effective. > > Meeting agenda > > 1. Update on I/H methods project > 2. Open discussion > > Connection details > > We will use Level 3 phone bridge for the voice call and joinme for screen sharing. We will not have any video. > > For the Level 3 voice call: > > 1. Using a regular phone, call the following number based on which country you are calling from. If the toll-free number does not work for some reason, please use the toll number. > > Toll-free Toll > > US 8007475150 tel:(800)%20747-5150 3032481290 tel:(303)%20248-1290 > UK 08004960577 02079040082 > Germany 08001014525 030700150716 > Japan 0120925970 0350501282, 0357674709 > Netherlands 08002658213 0207084833 > Spain 900800371 917911823 > Switzerland 0800700283 0434569404 > > > 2. Enter the following access code: 4454974 followed by # > > For the Joinme screen share: > > 3. Go to http://join.me/rcsbmeeting http://join.me/rcsbmeeting > > Please let me know if you have any further questions. > > Thank you. > > -- > Brinda Vallat > > RCSB > Center for Integrative Proteomics Research > Rutgers, The State University of New Jersey > 174 Frelinghuysen Rd > Piscataway NJ 08854-8076 > Email: brinda.vallat@rcsb.org mailto:brinda.vallat@rcsb.org > Phone: 848-445-4948 tel:(848)%20445-4948 > > > > > -- > Brinda Vallat > > RCSB > Center for Integrative Proteomics Research > Rutgers, The State University of New Jersey > 174 Frelinghuysen Rd > Piscataway NJ 08854-8076 > Email: brinda.vallat@rcsb.org mailto:brinda.vallat@rcsb.org > Phone: 848-445-4948 > > _______________________________________________ > IHM-repval mailing list > IHM-repval@salilab.org > https://salilab.org/mailman/listinfo/ihm-repval
--------------------------------------------------------------------------------------------------------------------------- Dr. Alexandre M.J.J Bonvin | Professor of Computational Structural Biology Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands Phone: +31-30-2533859 / 2652 | Email: a.m.j.j.bonvin@uu.nl mailto:a.m.j.j.bonvin@uu.nl http://www.uu.nl/staff/AMJJBonvin http://www.uu.nl/staff/AMJJBonvin | http://www.bonvinlab.org http://www.bonvinlab.org/ ---------------------------------------------------------------------------------------------------------------------------
Thank you for the feedback. It is an important requirement and we will address it.
Brinda
On Fri, Nov 17, 2017 at 2:23 PM, Alexandre Bonvin a.m.j.j.bonvin@uu.nl wrote:
> Dear all > > I was this week at a meeting in Hamburg where I advertised the new > deposition site. > > One very valid comment was about user-friendliness. To promote / stimulate > deposition it will be important to provide a simple way of editing the cif > files, i.e not only via the deposition system, but by providing examples > that can be edited in a simple manner. > > A cif editor would be great. And don’t come with the argument there are > python (or other) libraries to handle those. > This will not work for end users. > > Just passing on remarks I got from potential depositors (and these were > kind of software experts). > > Cheers > Alexandre > > On 17 Nov 2017, at 19:41, Brinda Vallat brinda.vallat@rcsb.org wrote: > > Thanks to everyone who joined us for the I/H methods meeting yesterday. It > is a challenge every time we organize one of these meetings since our time > zones span all the way from Japan to California and it is always > inconvenient to someone or the other. Regardless, thank you for joining the > meeting and contributing towards a very productive discussion. > > The meeting summary is now available on the project GitHub wiki page > https://github.com/ihmwg/IHM-dictionary/wiki/IHM-Meeting-Summary-Nov-16-2017. > Please let me know if you have any questions in this regard. > > Brinda > > > ---------- Forwarded message ---------- > From: Brinda Vallat brinda.vallat@rcsb.org > Date: Wed, Nov 15, 2017 at 12:33 PM > Subject: Reminder: This month's "large group" I/H methods meeting tomorrow > To: ihm-repval@salilab.org > > > Hello Everyone, > > Based on the doodle poll https://doodle.com/poll/h6uqs77v4mp7fbgy, this > month's I/H methods meeting is fixed for Thursday, November 16th at 1PM > PST, 3PM CST, 4PM EST, 9PM GMT, 10PM CET and 6AM JST (November 17th). The > following have confirmed their attendance. > > *Confirmed attendees* > > Ben Webb (UCSF, US) > Tom Goddard (UCSF, US) > Brinda Vallat (RCSB, US) > John Westbrook (RCSB, US) > Aleks Gutmanas (PDBe, UK) > John Berrisford (PDBe, UK) > Kumaran Baskaran (BMRB, US) > Lukas Honig (TU, Berlin) > Gert-Jan Bekker (PDBj, Japan) > > If anyone else would like to join the meeting, please let me know. I > encourage everyone to attend so as to make these meetings more effective. > > *Meeting agenda* > > 1. Update on I/H methods project > 2. Open discussion > > *Connection details* > > We will use Level 3 phone bridge for the voice call and joinme for screen > sharing. We will not have any video. > > *For the Level 3 voice call: * > > 1. Using a regular phone, call the following number based on which country > you are calling from. If the toll-free number does not work for some > reason, please use the toll number. > > Toll-free Toll > > *US* 8007475150 <(800)%20747-5150> > 3032481290 <(303)%20248-1290> > *UK* 08004960577 02079040082 > *Germany* 08001014525 030700150716 > *Japan* 0120925970 0350501282, > 0357674709 > *Netherlands* 08002658213 0207084833 > *Spain* 900800371 917911823 > *Switzerland* 0800700283 0434569404 > > 2. Enter the following access code: 4454974 followed by # > > *For the Joinme screen share: * > > 3. Go to http://join.me/rcsbmeeting http://join.me/rcsbmeeting > > Please let me know if you have any further questions. > > Thank you. > > -- > Brinda Vallat > > RCSB > Center for Integrative Proteomics Research > Rutgers, The State University of New Jersey > 174 Frelinghuysen Rd > https://maps.google.com/?q=174+Frelinghuysen+Rd+Piscataway+NJ+08854&entry=gmail&source=g > Piscataway NJ 08854 > https://maps.google.com/?q=174+Frelinghuysen+Rd+Piscataway+NJ+08854&entry=gmail&source=g > -8076 > Email: brinda.vallat@rcsb.org > Phone: 848-445-4948 <(848)%20445-4948> > > > > > -- > Brinda Vallat > > RCSB > Center for Integrative Proteomics Research > Rutgers, The State University of New Jersey > 174 Frelinghuysen Rd > https://maps.google.com/?q=174+Frelinghuysen+Rd+Piscataway+NJ+08854&entry=gmail&source=g > Piscataway NJ 08854 > https://maps.google.com/?q=174+Frelinghuysen+Rd+Piscataway+NJ+08854&entry=gmail&source=g > -8076 > Email: brinda.vallat@rcsb.org > Phone: 848-445-4948 <(848)%20445-4948> > > _______________________________________________ > IHM-repval mailing list > IHM-repval@salilab.org > https://salilab.org/mailman/listinfo/ihm-repval > > > ------------------------------------------------------------ > --------------------------------------------------------------- > Dr. Alexandre M.J.J Bonvin | Professor of Computational > Structural Biology > Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, > the Netherlands > https://maps.google.com/?q=Padualaan+8,+3584+CH+Utrecht,+the+Netherlands&entry=gmail&source=g > Phone: +31-30-2533859 <+31%2030%20253%203859> / 2652 | Email: > a.m.j.j.bonvin@uu.nl > http://www.uu.nl/staff/AMJJBonvin | http://www.bonvinlab.org > ------------------------------------------------------------ > --------------------------------------------------------------- > > >
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Alexandre Bonvin -
Brinda Vallat