MODELLER command reference

Sections in this Chapter describe technical aspects of MODELLER. They include:

• miscellaneous rules and features of MODELLER (Section 3.1);

• dealing with stereochemical parameters and molecular topology (Section 3.5);

• handling of atomic coordinates (Section 3.6);

• comparing and searching of sequences and structures (Section 3.9);

• calculating spatial restraints (Section 3.7),