| Name |
Typea |
World Wide Web addressb |
| DATABASES |
| CATH |
S |
http://www.biochem.ucl.ac.uk/bsm/cath/ |
| DBAli |
S |
http://www.salilab.org/DBAli/ |
| GenBank |
S |
http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html |
| GeneCensus |
S |
http://bioinfo.mbb.yale.edu/genome |
| MODBASE |
S |
http://salilab.org/modbase/ |
| MSD |
S |
http://www.rcsb.org/databases.html |
| NCBI |
S |
http://www.ncbi.nlm.nih.gov/ |
| PDB |
S |
http://www.rcsb.org/pdb/ |
| PSI |
S |
http://www.nigms.nih.gov/psi/ |
| Sacch3D |
S |
http://genome-www.stanford.edu/Sacch3D/ |
| SCOP |
S |
http://scop.mrc-lmb.cam.ac.uk/scop/ |
| TIGR |
S |
http://www.tigr.org/tdb/mdb/mdbcomplete.html |
| TrEMBL |
S |
http://srs.ebi.ac.uk/ |
| FOLD ASSIGNMENT |
| 123D |
S |
http://123d.ncifcrf.gov/ |
| 3D-PSSM |
S |
http://www.sbg.bio.ic.ac.uk/~3dpssm/ |
| BIOINBGU |
S |
http://www.cs.bgu.ac.il/~bioinbgu/ |
| BLAST |
S |
http://www.ncbi.nlm.nih.gov/BLAST/ |
| DALI |
S |
http://www2.ebi.ac.uk/dali/ |
| FASS |
S |
http://bioinformatics.burnham-inst.org/FFAS/index.html |
| FastA |
S |
http://www.ebi.ac.uk/fasta3/ |
| FRSVR |
S |
http://fold.doe-mbi.ucla.edu/ |
| FUGUE |
S |
http://www-cryst.bioc.cam.ac.uk/~fugue/ |
| LOOPP |
S |
http://ser-loopp.tc.cornell.edu/cbsu/loopp.htm |
| PDB-BLast/FASS |
S |
http://bioinformatics.ljcrf.edu/pdb_blast/ |
| PHD, TOPITS |
S |
http://www.predictprotein.org/ |
| PROFIT |
P |
http://www.came.sbg.ac.at/ |
| SAM-T99/T98 |
S |
http://www.cse.ucsc.edu/research/compbio/HMM-apps/ |
| THREADER |
S |
http://bioinf.cs.ucl.ac.uk/threader/ |
| UCLA-DOE FRSVR |
S |
http://fold.doe-mbi.ucla.edu/ |
| SEQUENCE ALIGNMENT |
| BCM SERVER |
S |
http://searchlauncher.bcm.tmc.edu |
| BLAST2 |
S |
http://www.ncbi.nlm.nih.gov/blast/bl2seq/wblast2.cgi |
| BLOCK MAKER |
S |
http://blocks.fhcrc.org/blocks/blockmkr/make_blocks.html |
| CLUSTALW |
S |
http://www2.ebi.ac.uk/clustalw/ |
| FASTA3 |
S |
http://www2.ebi.ac.uk/fasta3/ |
| Gerstein Group |
S |
http://bioinfo.mbb.yale.edu/Align/ |
| MULTALIN |
S |
http://prodes.toulouse.inra.fr/multalin/multalin.html |
| MODELING |
| 3D-JIGSAW |
S |
http://www.bmm.icnet.uk/servers/3djigsaw/ |
| CPH-Models |
S |
http://www.cbs.dtu.dk/services/CPHmodels/ |
| COMPOSER |
P |
http://www-cryst.bioc.cam.ac.uk/ |
| CONGEN |
P |
http://www.congenomics.com/congen/congen.html |
| TIGERFAMS |
S |
http://www.tigr.org/TIGRFAMs/index.shtml |
| ICM (a) |
P |
http://www.molsoft.com/ |
| InsightII (b) |
P |
http://www.accelrys.com/ |
| MODELLER |
P |
http://salilab.org/modeller/modeller.html |
| ModWeb |
S |
http://salilab.org/modweb |
| QUANTA (b) |
P |
http://www.accelrys.com/ |
| SYBYL (c) |
P |
http://www.tripos.com/ |
| SCWRL |
P |
http://dunbrack.fccc.edu/SCWRL3.php |
| SDSC1 |
S |
http://cl.sdsc.edu/hm.html |
| SWISS-MODEL |
S |
http://www.expasy.ch/swissmod/SWISS-MODEL.html |
| WHAT IF |
P |
http://www.cmbi.kun.nl/whatif/ |
| MODEL EVALUATION |
| ANOLEA |
S |
http://protein.bio.puc.cl/cardex/servers/index.html |
| BIOTECHd |
S |
http://biotech.embl-ebi.ac.uk:8400/ |
| CAFASP |
S |
http://bioinfo.pl/cafasp/ |
| ERRAT |
S |
http://www.doe-mbi.ucla.edu/Services/ERRATv2/ |
| EVA |
S |
http://cubic.bioc.columbia.edu/eva/ |
| LiveBench |
S |
http://bioinfo.pl/LiveBench/ |
| PROCHECK |
P |
http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html |
| ProsaIIe |
P |
http://www.came.sbg.ac.at/ |
| PROVE |
S |
http://www.ucmb.ulb.ac.be/UCMB/PROVE |
| VERIFY3D |
S |
http://www.doe-mbi.ucla.edu/Services/Verify_3D/ |
| WHATCHECK |
P |
http://www.sander.embl-heidelberg.de/whatcheck/ |
| OTHERS... |
| BioInfo |
S |
http://BioInfo.PL/meta/ |
| Bork Group |
S |
http://dove.embl-heidelberg.de/3D/ |
| CASP |
S |
http://predictioncenter.llnl.gov/ |
| GeneQuiz II |
S |
http://columba.ebi.ac.uk:8765/ext-genequiz/ |
| Gerstein Group |
S |
http://bioinfo.mbb.yale.edu/genome/ |
| META-PP |
S |
http://cubic.bioc.columbia.edu/pp/doc/meta_intro.html |
| PEDANT |
S |
http://pedant.gsf.de/ |
| SearchLauncher |
S |
http://searchlauncher.bcm.tmc.edu/ |
| WorkBench |
S |
http://workbench.sdsc.edu/ |
