Thanks for the help,
Got more information,
problem was missing * at end of .pri file
Doohh!
Tim
Andras Fiser wrote:
> Hello
>
> usually the text after _E> should be informative.
>
> there is a list of error messages, which might not be much more
> helpful, but you can take a look:
>
> $MODINTALL6v0/modlib/messages.lib
>
> in your cases the alignment format is incorrect somewhere, alignment
> code or sequence is not matching the top file variable or the PDB entry.
>
> an extended log file can be obtained with
>
> SET OUTPUT_FORMAT = 1 1 1 1 1
>
> a very extended log file can be obtained by
>
> SET OUTPUT_FORMAT = 1 1 1 1 2
>
> best
> Andras
>
> "T. .R. Dafforn" wrote:
> >
> > Similar question really.
> >
> > I end up with :
> > ipdbnam_W> environment variable PDBENT undefined
> > rdpir___E> reading in alignment
> >
> > then everything dies.
> > I have been using modeller sucessfully for three years but for some reason this
> > file won't run?
> > Cheers
> > Tim
> > Xavier Gallet wrote:
> >
> > > Hi,
> > >
> > > My last Modeller job failed, and the last line of my log file is:
> > >
> > > coutpir___E> reading in alignment
> > >
> > > Can you tell me what 'coutpir' means ??
> > > More generally, where can I find a list of Modeller error messages and their
> > > significances.
> > >
> > > Thanks in advance,
> > >
> > > Xavier Gallet, PhD
> > > Department of Bioinformatics & IT
> > > GenOdyssee S.A.
> > > 3 avenue du Canada
> > > Batiment Alpha, Porte 6
> > > B.P. 810 Les Ulis
> > > 91974 Courtaboeuf Cedex, France
> > >
> > > e-mail :
> > > website: http://www.genodyssee.com
> >
> > --
> > Tim Dafforn
> > University of Cambridge
> > Structural Medicine Unit
> > Cambridge Institute for Medical Research
> > Hills Rd, Cambridge CB2 2XY.
> > UK
> > Tel. (01223) 763230
> > Fax. (01223) 336827
> > http://smokeroom.cimr.cam.ac.uk/
>
> --
> ,
> Andras Fiser, PhD # phone: (212) 327 7216
> The Rockefeller University # fax: (212) 327 7540
> Box 270, 1230 York Avenue # e-mail:
> New York, NY 10021-6399, USA # http://salilab.org/~andras
--
Tim Dafforn
University of Cambridge
Structural Medicine Unit
Cambridge Institute for Medical Research
Hills Rd, Cambridge CB2 2XY.
UK
Tel. (01223) 763230
Fax. (01223) 336827
http://smokeroom.cimr.cam.ac.uk/