Hi..
I am getting following when I first tried the tutoraial:
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palomar (117) % mod6v0 model-default
sys-2 : UNRECOVERABLE error on system request
No such file or directory
Encountered during an OPEN of unit 11
Fortran unit 11 is not connected
IOT Trap
/projects/nbcr/breddy/SOFTWARE/MODELLER/MODELLER6v0/modeller6v0/bin/mod6v0[41]:
495462 Abort
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Please help:
my modified tops file where I only changed the atom file directory
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# Homology modelling by the MODELLER TOP routine 'model'.
INCLUDE # Include the predefined TOP routines
SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log
file
SET ALNFILE = 'alignment.ali' # alignment filename
SET KNOWNS = '5fd1' # codes of the templates
SET SEQUENCE = '1fdx' # code of the target
SET ATOM_FILES_DIRECTORY =
'/projects/nbcr/breddy/SOFTWARE/MODELLER/MODELLER6v0/TEST' # directories
for input atom files
SET STARTING_MODEL= 1 # index of the first model
SET ENDING_MODEL = 1 # index of the last model
# (determines how many models to
calculate)
CALL ROUTINE = 'model' # do homology modelling
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