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Hi,
I am a new MODELLER user. I am interested in
generating a structure file of the protein of my interest.I was wondering, if there is a way in MODELLER to write down a
"CHARMM like .psf " file that lists all the bonds, bends, dihedrals, improper
dihedrals etc ( for an all atom model, including hydrgens). Supposedly, the
"BUILD MODEL" only generates the 3 D coordinates of the atoms in the model,
based on the specified sequence of amino acid and the CHARMM topology and
parameter file. But I can not figure out how to output a psf, structure file of
my model protein.
Looking for some help,
Thanks in advance,
Nitin
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