apparently in your alignment file there is a sequence called "xnb"
that is not found in your "myseq.ali" file.
Be sure sequence code names are matching between your top, alignment
file, and external file names.
Also, check out the top routine example provided under the
sequence_search command in the manual.
marco sette wrote:
> Dear all,
> I'm new in using the modeller package.
> After downloading the program I started a simple top
> script both in a PC using linux (RedHat 7.0) or on a
> alpha station.
> In the first case the log file contains only normal
> informations about the program (modeller 6.v.0 ecc.)
> without the list of similar proteins; in the second
> one I have these two lines:
> read_se_367E>sequence not found; code: P1;xnb
> recover___E> ERROR_STATUS >= STOP_ON_ERROR : 1 1
> the script is very simple
> SET SEARCH_RANDOMIZATIONS = 100
> SET FILE = 'myseq.seq'
> SEQUENCE_SEARCH ALIGN_CODES = 'myseq', DATA_FILE = ON
> and I have the myseq.seq in the same directory. The
> .dat file is not generated.
> Does anyone has some suggestions ?
> Thanks for your help,
> Dillo con una cartolina!