hello,
one potential Modeller read error may originate from the problem if you
do not have a line feed at the end of your ali file.
So, when you genereate your alignment with perl, do not forget a \n in
the last print command.
by opening and saving a file in pico or vi, a carriage return is
automatically added to your file.
Andras
Michael Buck wrote:
>
> I am having the following error message:
>
> rdpir___270E> Error reading/processing file: tempalign
> recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
>
> I can fix the problem by open my alignment file "tempalign" and resaving it
> with a unix text editor like pico, even if I don't change any thing in the
> file it will then work fine. Does anybody know what is causing this error?
> I use perl scripts to write my alignment files and can't find what is
> causing the error. Is there a hidden character I can't see?
>
> Thanks,
>
> Michael Buck
>
> ************************************************
> Michael Buck
> NCSU Genetics
>
> Phone (919)515-5759
> Fax (919)515-3355
> http://www4.ncsu.edu/~mjbuck
> *************************************************
--
,
Andras Fiser, PhD # phone: (212) 327 7216
The Rockefeller University # fax: (212) 327 7540
Box 270, 1230 York Avenue # e-mail:
New York, NY 10021-6399, USA # http://salilab.org/~andras