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Strange Error

I am having the following error message:

rdpir___270E> Error reading/processing file:  tempalign
recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1       1

I can fix the problem by open my alignment file "tempalign" and resaving it
with a unix text editor like pico, even if I don't change any thing in the
file it will then work fine.  Does anybody know what is causing this error?
 I use perl scripts to write my alignment files and can't find what is
causing the error.  Is there a hidden character I can't see?


Michael Buck

Michael Buck
NCSU Genetics

Phone  (919)515-5759
Fax 	   (919)515-3355