Cutsom build residues, was RE: phospo-serine residues

["Bozidar Jerkovic" <>]

Hi,

In the light of this discussion I invite all of you to submit their
"custom build" residues and I will try to incorporate them either in one
of the future editions of MODELLER, or make them available on our web
site.

Thanks in advance,
Bozidar


-----Original Message-----
From: 
[">mailto:] On Behalf Of Andras
Fiser
Sent: Friday, April 12, 2002 6:14 PM
Cc: 'Voula Kanelis'; 
Subject: Re: phospo-serine residues


It takes some time, but not much to define a new residue type manually.
Please follow the steps of FAQ 17 on page 25-26 in the new manual ( the
one on our web site).

best wishes,

Andras


Bozidar Jerkovic wrote:
> 
> Hi,
> 
> I just checked and found out that even our in house version of 
> MODELLER, 6v2 (soon to be released though) is still using: # Version: 
> August 13, 1993 #
> # LIBRARY OF RESIDUE TYPES AND RESIDUE PATCHES
> #
> # MODELLER 1.1, Copyright Andrej Sali
> 
> Only hope is that someone on the modeller_usage list might have 
> phosphoserine residue.
> 
> Good luck,
> Bozidar
> 
> -----Original Message-----
> From: 
> [">mailto:] On Behalf Of 
> Voula Kanelis
> Sent: Wednesday, April 10, 2002 9:29 AM
> To: 
> Subject: phospo-serine residues
> 
> Hello,
> 
> I am currently using Modeller 4 and need a phosphoserine residue. 
> Unfortunately, this residue is not defined in the modlib files and I 
> do not have access to CHARM or QUANTA to be able to create it (a 
> problem to
> 
> be fixed shortly - hopefully). Does anyone have such a residue defined

> and would be willing to share?
> 
> Thanks in advance,
> Voula Kanelis
> 
> --

-- 
    ,
Andras Fiser, PhD            # phone: (212) 327 7216
The Rockefeller University   # fax:   (212) 327 7540 
Box 270, 1230 York Avenue    # e-mail:
New York, NY 10021-6399, USA # http://salilab.org/~andras