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Which loop energy?

Hi all, 	
	I have recently started to model GPCRs, but as with everyone 
else I am having trouble with the loops. I have followed the tutorials 
, kindly given, and have resulted with a number of files with different 
loops starting and ending in different locations. I have investingated 
the log files for energy terms, as I understand it the loop model with 
the lowest energy term is a good starting point. My problem which 
energy term in the log file do I use, as there seems to be a number 
of energy terms even for the same loop model number. 
> 	Many thanks for any help 
> 	John