Hi,
The final energy score for loops will be reported in the header of each
of the the coordinate files (*.B*) in the line of
MODELLER OBJECTIVE FUNCTION:
the lower the better: when grabbing and sorting pay attention that it
can be negative as well.
Andras
J Simms wrote:
>
> Hi all,
> I have recently started to model GPCRs, but as with everyone
> else I am having trouble with the loops. I have followed the tutorials
> , kindly given, and have resulted with a number of files with different
> loops starting and ending in different locations. I have investingated
> the log files for energy terms, as I understand it the loop model with
> the lowest energy term is a good starting point. My problem which
> energy term in the log file do I use, as there seems to be a number
> of energy terms even for the same loop model number.
> > Many thanks for any help
> > John
> >
--
,
Andras Fiser, PhD # phone: (212) 327 7216
The Rockefeller University # fax: (212) 327 7540
Box 270, 1230 York Avenue # e-mail:
New York, NY 10021-6399, USA # http://salilab.org/~andras