Re: criteria for best template....after comparison of many structures

[Andras Fiser <>]

Hello Gowtham, 

you may want to consult one of the many recent reviews from Sali or the
following paper 
from Sanzhez and Sali
http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=9811845

Andras

gowthaman ramasamy wrote:
> 
> hello fellow modellers....
> im trying to automate modeller to model some 200 proteins. i could generate a
> script which selects the the group of template. and my compare.top compares all
> these templates and produces the output file called compare.log.
> 
> BUT  I DONT know what criteria i should use to select the best template out of the
> bunch.  i attached my
> 
> compare.top
> compare.log
> files with this mail.(as compar.tar)   ..can any one help me ......... what
> information  i should look in  LOG file to select best template(s). if it is
> dendrogram..... how to do it...
> 
> many thanx in advance
> gowtham
> graduate student
> ICGEB
> New Delhi
> INDIA
> 
>   ------------------------------------------------------------------------
>                  Name: compar.tar
>    compar.tar    Type: Unix Tape Archive (application/x-tar)
>              Encoding: base64

-- 
    ,
Andras Fiser, PhD            # phone: (212) 327 7216
The Rockefeller University   # fax:   (212) 327 7540 
Box 270, 1230 York Avenue    # e-mail:
New York, NY 10021-6399, USA # http://salilab.org/~andras