Hi,
Change: SET MD_LEVEL = 'refine1'
To: SET MD_LEVEL = 'refine_1'
Best,
Bozidar
> I wanted to use modeller6v2 with these attached files but I couldn't find
> where is the problem. Would you help me please. I tested Modeller with the
> file in the diretory examples/ and it worked well. So I couldn't understand...
INCLUDE
SET OUTPUT_CONTROL = 1 1 1 1 1
SET MD_LEVEL = 'refine1'
SET STARTING_MODEL=1
SET ENDING_MODEL=10
SET DEVIATION = 4.0
SET KNOWNS='1ORD'
SET HETATM_IO = off
SET WATER_IO = off
SET HYDROGEN_IO = off
SET ALIGNMENT_FORMAT = 'PIR'
SET SEQUENCE='gadmid'
SET ALNFILE='AligntPubli1.ali'
CALL ROUTINE='model'
> Thank you very much
>
> Violaine Moreau
>
Bozidar Yerkovich, PhD
Rockefeller University
New York, NY, 10021, USA
212-327-7206
http://salilab.org/modeller