Dear Sascha,
> 1. RESTRAINTS: I didn't get the idea of how to *ADD* restraints to those
> modeller makes itself. Actually, I didn't get the idea of how manually add
> restraints with modeller, at all.
I do not have a reply to your first question (in fact, all the syntax is in
the documentation, but how to apply this is another question - if you find a
good MODELLER tutorial for advanced applications - or someone on the list
knows one, I would be happy to learn about it).
> 2. RAND_SEED: Is there a way to define the random seed for the "CALL
> ROUTINE = 'model'" command?
As for the second one, just insert this before calling 'model'.
SET RAND_SEED = -12345
But be particularry CAREFUL to use NEGATIVE seeds (positive won't work ;-)
Kind regards, Karsten.