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[modeller_usage] multi-chain modelling
- To: modeller-care@ucsf.edu
- Subject: [modeller_usage] multi-chain modelling
- From: "V.Nadeem Ahmad" <vnadeem AT ibab.ac.in>
- Date: Mon, 30 Aug 2004 10:41:11 +0530 (IST)
- Cc:
- Reply-to: vnadeem AT ibab.ac.in
- Resent-date: Mon, 30 Aug 2004 09:26:20 -0700
- Resent-from: modeller-care@ucsf.edu
- Resent-message-id: <200408301626.i7UGQKMn028718 AT guitar.compbio.ucsf.edu>
- Resent-to: Modeller Usage mailing list <modeller_usage@listsrv.ucsf.edu>
Dear Modeller,
I want to build a model A in the presence of Model B ie to get an
effect of presence of Model B on A.i used the alignment as follows
>model_A
aaaaaaaaaaaaaaabbbbbbbbbbbbb
>templateA
aaaaaaaaaaaaaaa-------------
>Model_B
---------------bbbbbbbbbbbbbb
Is this alignment correct. and what script i sould use since i want to use
Model B for creating an environment but not for modelling.is this approach
correct for multi chain modelling?
with regards
Nadeem Ahmad