Dear Modeller,
I want to build a model A in the presence of Model B ie to get an
effect of presence of Model B on A.i used the alignment as follows
>model_A
aaaaaaaaaaaaaaabbbbbbbbbbbbb
>templateA
aaaaaaaaaaaaaaa-------------
>Model_B
---------------bbbbbbbbbbbbbb
Is this alignment correct. and what script i sould use since i want to use
Model B for creating an environment but not for modelling.is this approach
correct for multi chain modelling?
with regards
Nadeem Ahmad