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[modeller_usage] (no subject)



Dear Modeller,
 
My top file contains user-defined restraints involving hydrogen atoms.
 
When I add 'SET DO_LOOPS =1' to the top file, the modeller has the following error.
 
add_res_442E> One or more atoms absent from MODEL:  O:381: HD1:381:
 
I guess this is related to that LOOPS optimizes nonhydrogen  atoms. Is there a way around this problem?
 
Best regards,
Han
 
Han Choe, PhD
Department of Physiology
University of Ulsan, College of Medicine
Songpagoo Poongnapdong 388-1
Seoul 138-736, Korea