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Optimize in Modeller 6v2

Dear all,

It is possible, that you have received this message already.
I would like to optimize a protein model using molecular dynamics approach,

but I have a problem with choosing of parameters for OPTIMIZE command


Does anybody know a suitable MD script for model optimization in Modeler 6.2?

Thank you very much for your kind help!

With best regards,

Alex Bazilevsky


Alex Bazilevsky
PhD student
Protein Engineering Departmant
Institute of Molecular Biology & Genetics
150 Acad. Zabolotnogo Street
Kiev, 03143, Ukraine
Tel.: 38 044 266-5589, Fax: 38 044 266-0759