On Wed, Jul 14, 2004 at 07:16:24AM +0100, shantanu gautam wrote:
> I am doing research at IIT Kharagpur on modeling retrotransposable genes.
> I faced severe problem while running Widows based modeller version. The
> steps I had followed for running modeller is
>
> 1) generated alignment file as .ali file
>
> 2) generated pdb display file and structure file as pdb format.
>
> 3) Model-default
>
> 4) Then I run the modeller from the command prompt but after giving
> mod.bat model-default.top it was showing error Len,string:
> ?D:\sh\modeller6v2\bin\sg\\
>
> 5) The folder containing the modeller is sh and sg is folder in
> which we are working.
1. Run modeller with 'mod.bat model-default.top > model-default.log'.
2. Send me model-default.top, model-default.log, and any other input
files you used (i.e. .ali file and PDB file).
Without seeing your input files, it's extremely hard to diagnose your
problem.
Ben Webb, Modeller Caretaker
--
http://www.salilab.org/modeller/
Modeller mailing list: http://salilab.org/mailman/listinfo/modeller_usage