Re: [modeller_usage] modeller problem

[Modeller Caretaker <modeller-care@ucsf.edu>]

On Wed, Jul 14, 2004 at 07:16:24AM +0100, shantanu gautam wrote:
> I am doing research at IIT Kharagpur on modeling retrotransposable genes.
> I faced severe problem while running Widows based modeller version. The
> steps I had followed for running modeller is
> 
> 1)      generated alignment file as .ali file
> 
> 2)      generated pdb display file and structure file as pdb format.
> 
> 3)      Model-default
> 
> 4)      Then I run the modeller from the command prompt but after giving
> mod.bat model-default.top it was showing error  Len,string:
> ?D:\sh\modeller6v2\bin\sg\\
> 
> 5)      The folder containing the modeller is sh and sg is folder in
> which we are working.

1. Run modeller with 'mod.bat model-default.top > model-default.log'.
2. Send me model-default.top, model-default.log, and any other input
   files you used (i.e. .ali file and PDB file).

Without seeing your input files, it's extremely hard to diagnose your
problem.

	Ben Webb, Modeller Caretaker
-- 
modeller-care@ucsf.edu             http://www.salilab.org/modeller/
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