[modeller_usage] Re: modeller running-help

[Modeller Caretaker <>]

Elavazhagan wrote:
> My alignment file has the header as 
>
> > P1;1JLN
>
> structureX:1JLN: 252 :A: 548 :A:undefined:undefined:-1.00:-1.00
>
> What do the last four sections (undefined:undefined:-1.00:-1.00)  indicate?

See http://salilab.org/modeller/manual/node64.html

> I have found the error in log file as
>
>  check_a_337E> Structure not read in:        1
> recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1       1

It usually means that your alignment does not match the PDB file. See 
http://salilab.org/modeller/FAQ.html#27

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage