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Re: [modeller_usage] dihedral restraints

Judy Barnett-Norris wrote:

I have been reading about the restraints and have  a question.  I am
modeling a GPCR using rhodopsin's crystal structure as my template.  I
want to model one area of a helix using some backbone dihedral values
different from rhodopsin (10 actual dihedrals).  Do I use the
special.restraints script and list my specific dihedrals or do I need to
do something similar to the cis proline example where I would unpick and
then add each restraint??  If you could just point me in the
direction....
To add additional restraints, you use the special_restaints routine. See, for example http://salilab.org/modeller/manual/node30.html
This cis proline example in the FAQ is just a special case of using the special_restraints routine. 

	Ben Webb, Modeller Caretaker
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