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This page contains example Python scripts for MODELLER. To submit your own examples, please contact us.

Examples

• Restraints on pseudo atoms: demonstrates the use of restraints between real and pseudo atoms.
• Mutate model: demonstrates the mutation and optimization of a single residue (SNP).
• Missing residues: demonstrates using Modeller to fill in missing residues.
• Rebuilding sequence databases: scripts to rebuild sequence databases from PDB.
• Cyclic protein: demonstrates how to build a model of a cyclic protein.
• Cluster PDBs: make a clustered representative from a set of PDBs of the same sequence.
• Using non-standard parameter files: using customized restyp.lib, par.lib and top.lib files with automodel.
• Make alpha helix: make an alpha-helical model from primary sequence alone.