sorry to bother u with this simple question ...
I use following top script to extract sequences from pdb file '1PFZ'.
works fine. But it reads all the different chain (A,B,C ..etc). what
should i do if i want to get only sequence of chain A.
read_model FILE = '1PFZ',
sequence_to_ali atom_files = '1PFZ', align_codes = 'gowtham'
I tried the following and did not work
read_model FILE = '1PFZ',MODEL_SEGMENT = '@:A' 'X:A'
#this works but writes only a chain break and * (/*) as a third line in
output file 'seq.pir'
many thanks in advance .... i could not get answer from list archives. i
am sorry to bother you guys.
Malaria Research Group,
ICGEB , New Delhi.
91-11-26173184; 91-11-26189360 #extn 314