When I view my structural model as a cartoon, it contains several
short 'helices', composed of only three residues each. The template
pdb shows each of these regions as unstructured loops. Therefore, I
would like to remove these short helices from my model. Is there a
simple way to remove secondary structure?
Note, I have tried loop refinement; it worked on a couple of my short
helices, but has failed to fix my last one.
Any suggestions are appreciated.