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modeller_usage August 2023

modeller_usage@salilab.org

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to model heterodimer protein of mossing residue
by Arun Dhanasekaran 31 Aug '23

31 Aug '23

i tried a build a homology model of a heterodimer protein,since it contains missing residue i have to model that. But i am only familiar with single chain homology modelling and fro multi chain i am getting many errors like in greeting ali flie. and from tutorial also i am not getting everything clearly. can i get a detailed explantiojn on multi chain modelling

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generate a psf file
by sedmo.info＠gmail.com 08 Aug '23

08 Aug '23

Dear all, I have used modeller to generate a pdb file. unfortunately, the pdb file is not regular as the columns 10 and 11 interfere. What can I do? I can not use the pdb file to generate a psf file.

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