Hi List,
In multi-chain modeling, I am wondering if the alignment and modeling
algorithms take into account multiple chains and their spatial locations
concurrently or just simply model each chain separately and then combine
the results.
Related to this, is the dope score assessment a sum of scores for chains in
these cases (in which case, it's assumed the statistics are measuring two
independent models), or the correlation of chains are considered in the
statistical assessment?
Thank you in advance
Amin Zia,
Stanford Immunology