Hi, Please help me in this regard.
I was working on windows XP with Modeller 9v5 and python v 2.5.1.
Now I have another PC with Windows 7 Ultimate. I tried to run modeller 9v5
and python 2.5.1. on windows7. There was no error and no files generated in
folder. What should I do?
Is it because of wrong combination of modeller and python. If yes then
which versions I should use.
script I used.
# Homology modeling with multiple templates
from modeller import * # Load standard Modeller classes
from modeller.automodel import * # Load the automodel class
log.verbose() # request verbose output
env = environ() # create a new MODELLER environment to build this model in
# directories for input atom files
env.io.atom_files_directory = ['.', '../atom_files']
a = automodel(env,
alnfile = 'alignment.ali', # alignment filename
knowns = ('tseq.pdb'), # codes of the templates
sequence = 'qseq') # code of the target
a.starting_model= 1 # index of the first model
a.ending_model = 1 # index of the last model
# (determines how many models to
a.make() # do the actual homology modeling
Thanks in advance.