I am running modeller8v2 to get the model of my protein. In this case, I do have the NMR experimental data (about 400 restraints). Now, I am able to run my structures with restraints I want to have from the NMR experiments. In this case, I would like to do following. I would like modeller restrains to be applied region for which I do not have any restrains, but for the region where I can define secondary structures via NMR experiment, I want to turn off modeller-derived restrains, or decrease weighing factor of the modeller-derived restraints, that is, I would like my restraints to weigh more then modeller-derived restraints.
If you need make any comments on this subject, I would be so much pleased. If you have performed anything like that, and have any script available, I really want to get it.
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