Hello everybody,
I am having a problem with my model. I am new to Modeller but I googled and
couldn't find an answer.
I am selecting the residues I want to form the disulphide bonds but there is
a one cys that gets in a way and when I visualize the disulphides in Pymol,
I can see three cysteines are bonded together. How can I prevent that?
Here are my patches:
class MyModel(automodel):
def special_patches(self, aln):
self.patch(residue_type='DISU', residues=(self.residues['76'], self.
residues['241']))
self.patch(residue_type='DISU', residues=(self.residues['46'], self.
residues['122']))
self.patch(residue_type='DISU', residues=(self.residues['188'],
self.residues['206']))
self.patch(residue_type='DISU', residues=(self.residues['105'],
self.residues['202']))
self.patch(residue_type='DISU', residues=(self.residues['265'],
self.residues['228']))
self.patch(residue_type='DISU', residues=(self.residues['113'],
self.residues['183']))
self.patch(residue_type='DISU', residues=(self.residues['127'],
self.residues['171']))
Since Modeller only reads ATOM and HETEATOM records I dont really understand
why is this happening.
Thank you for any help!
