hi
i just want to know if there is any script available in modeller that put
in dashes (gap character) instead of missing residues when sequence is read
from pdb. I am using following script:
from modeller import *# Get the sequence of the 1qg8 PDB file, and
write to an alignment filecode = '1qg8'e = environ()m = model(e,
file=code)aln = alignment(e)aln.append_model(m,
align_codes=code)aln.write(file=code+'.seq')
it is giving me file without missing residues but i need to have
dashes in place of missing residues
please reply
thank you
